PyNEST examples

Simple networks

  • ../notebooks/notebooks/one_neuron

  • ../notebooks/notebooks/one_neuron_with_noise

  • ../notebooks/notebooks/twoneurons

  • ../notebooks/notebooks/balancedneuron

  • ../notebooks/notebooks/aeif_cond_beta_multisynapse

  • ../notebooks/notebooks/testiaf

  • ../notebooks/notebooks/vinit_example

  • ../notebooks/notebooks/mc_neuron

2D Spatially-structured networks

  • ../notebooks/notebooks/spatial/conncomp

  • ../notebooks/notebooks/spatial/conncon_sources

  • ../notebooks/notebooks/spatial/conncon_targets

  • ../notebooks/notebooks/spatial/connex

  • ../notebooks/notebooks/spatial/connex_ew

  • ../notebooks/notebooks/spatial/ctx_2n

  • ../notebooks/notebooks/spatial/gaussex

  • ../notebooks/notebooks/spatial/grid_iaf

  • ../notebooks/notebooks/spatial/grid_iaf_irr

  • ../notebooks/notebooks/spatial/grid_iaf_oc

3D Spatially-structured networks

  • ../notebooks/notebooks/spatial/test_3d

  • ../notebooks/notebooks/spatial/test_3d_exp

  • ../notebooks/notebooks/spatial/test_3d_gauss

NEST Sudoku solver

  • ../notebooks/notebooks/sudoku/sudoku_solver

  • ../notebooks/notebooks/sudoku/plot_progress

NEST Pong game

  • ../notebooks/notebooks/pong/run_simulations

  • ../notebooks/notebooks/pong/generate_gif

Astrocytes

  • ../notebooks/notebooks/astrocytes/astrocyte_single

  • ../notebooks/notebooks/astrocytes/astrocyte_interaction

  • ../notebooks/notebooks/astrocytes/astrocyte_small_network

  • ../notebooks/notebooks/astrocytes/astrocyte_brunel

Random balanced networks (Brunel)

  • ../notebooks/notebooks/brunel_alpha_nest

  • ../notebooks/notebooks/brunel_delta_nest

  • ../notebooks/notebooks/brunel_siegert_nest

  • ../notebooks/notebooks/brunel_exp_multisynapse_nest

  • ../notebooks/notebooks/brunel_alpha_evolution_strategies

Cortical microcircuit (Potjans)

  • ../notebooks/notebooks/Potjans_2014/index

GLIF (from Allen institute)

  • ../notebooks/notebooks/glif_cond_neuron

  • ../notebooks/notebooks/glif_psc_neuron

  • ../notebooks/notebooks/glif_psc_double_alpha_neuron

Compartmental neurons

  • ../notebooks/notebooks/compartmental_model/receptors_and_current

  • ../notebooks/notebooks/compartmental_model/two_comps

Rate neurons

  • ../notebooks/notebooks/lin_rate_ipn_network

  • ../notebooks/notebooks/rate_neuron_dm

GIF (from Gerstner lab)

  • ../notebooks/notebooks/gif_cond_exp_multisynapse

  • ../notebooks/notebooks/gif_population

  • ../notebooks/notebooks/gif_pop_psc_exp

Hodgkin-Huxley

  • ../notebooks/notebooks/hh_psc_alpha

  • ../notebooks/notebooks/hh_phaseplane

Brody Hopfield

  • ../notebooks/notebooks/BrodyHopfield

Brette and Gerstner

  • ../notebooks/notebooks/brette_gerstner_fig_2c

  • ../notebooks/notebooks/brette_gerstner_fig_3d

Precise spiking

  • ../notebooks/notebooks/precise_spiking

Campbell Siegert

  • ../notebooks/notebooks/CampbellSiegert

SONATA network

  • ../notebooks/notebooks/sonata_example/sonata_network

Gap junctions

  • ../notebooks/notebooks/gap_junctions_two_neurons

  • ../notebooks/notebooks/gap_junctions_inhibitory_network

Structural plasticity

  • ../notebooks/notebooks/structural_plasticity

Synapse collection

  • ../notebooks/notebooks/synapsecollection

Urbanczik

  • ../notebooks/notebooks/urbanczik_synapse_example

Clopath

  • ../notebooks/notebooks/clopath_synapse_spike_pairing

  • ../notebooks/notebooks/clopath_synapse_small_network

Short-term plasticity

  • ../notebooks/notebooks/iaf_tum_2000_short_term_depression

  • ../notebooks/notebooks/iaf_tum_2000_short_term_facilitation

  • ../notebooks/notebooks/evaluate_tsodyks2_synapse

Recording and analyzing networks

  • ../notebooks/notebooks/multimeter_file

  • ../notebooks/notebooks/plot_weight_matrices

  • ../notebooks/notebooks/if_curve

  • ../notebooks/notebooks/pulsepacket

  • ../notebooks/notebooks/correlospinmatrix_detector_two_neuron

  • ../notebooks/notebooks/cross_check_mip_corrdet

Stimulating networks

  • ../notebooks/notebooks/sinusoidal_poisson_generator

  • ../notebooks/notebooks/sinusoidal_gamma_generator

  • ../notebooks/notebooks/repeated_stimulation

  • ../notebooks/notebooks/sensitivity_to_perturbation

  • ../notebooks/notebooks/intrinsic_currents_spiking

  • ../notebooks/notebooks/intrinsic_currents_subthreshold

Handling output

  • ../notebooks/notebooks/recording_demo

  • ../notebooks/notebooks/store_restore_network

  • ../notebooks/notebooks/music_cont_out_proxy_example/nest_script

HPC benchmark

  • ../notebooks/notebooks/hpc_benchmark

Connection set algebra

  • ../notebooks/notebooks/csa_example

  • ../notebooks/notebooks/csa_spatial_example

Contents:

Indices and tables