.. _pynest_examples: PyNEST examples =============== .. grid:: 1 1 2 3 .. grid-item-card:: Simple networks :img-top: ../static/img/pynest/mc_neuron.png * :doc:`../notebooks/notebooks/one_neuron` * :doc:`../notebooks/notebooks/one_neuron_with_noise` * :doc:`../notebooks/notebooks/twoneurons` * :doc:`../notebooks/notebooks/balancedneuron` * :doc:`../notebooks/notebooks/aeif_cond_beta_multisynapse` * :doc:`../notebooks/notebooks/testiaf` * :doc:`../notebooks/notebooks/vinit_example` * :doc:`../notebooks/notebooks/mc_neuron` .. grid-item-card:: 2D Spatially-structured networks :img-top: ../static/img/pynest/layer4.png * :doc:`../notebooks/notebooks/spatial/conncomp` * :doc:`../notebooks/notebooks/spatial/conncon_sources` * :doc:`../notebooks/notebooks/spatial/conncon_targets` * :doc:`../notebooks/notebooks/spatial/connex` * :doc:`../notebooks/notebooks/spatial/connex_ew` * :doc:`../notebooks/notebooks/spatial/ctx_2n` * :doc:`../notebooks/notebooks/spatial/gaussex` * :doc:`../notebooks/notebooks/spatial/grid_iaf` * :doc:`../notebooks/notebooks/spatial/grid_iaf_irr` * :doc:`../notebooks/notebooks/spatial/grid_iaf_oc` .. grid-item-card:: 3D Spatially-structured networks :img-top: ../static/img/pynest/spatial_test3d.png * :doc:`../notebooks/notebooks/spatial/test_3d` * :doc:`../notebooks/notebooks/spatial/test_3d_exp` * :doc:`../notebooks/notebooks/spatial/test_3d_gauss` .. grid:: 1 1 2 3 .. grid-item-card:: NEST Sudoku solver :img-top: ../static/img/sudoku_solution.gif * :doc:`../notebooks/notebooks/sudoku/sudoku_solver` * :doc:`../notebooks/notebooks/sudoku/plot_progress` .. grid-item-card:: NEST Pong game :img-top: ../static/img/pong_sim.gif * :doc:`../notebooks/notebooks/pong/run_simulations` * :doc:`../notebooks/notebooks/pong/generate_gif` .. grid-item-card:: Astrocytes :img-top: ../static/img/astrocyte_interaction.png * :doc:`../notebooks/notebooks/astrocytes/astrocyte_single` * :doc:`../notebooks/notebooks/astrocytes/astrocyte_interaction` * :doc:`../notebooks/notebooks/astrocytes/astrocyte_small_network` * :doc:`../notebooks/notebooks/astrocytes/astrocyte_brunel` .. grid:: 1 1 2 3 .. grid-item-card:: Random balanced networks (Brunel) :img-top: ../static/img/pynest/brunel_alpha.png * :doc:`../notebooks/notebooks/brunel_alpha_nest` * :doc:`../notebooks/notebooks/brunel_delta_nest` * :doc:`../notebooks/notebooks/brunel_siegert_nest` * :doc:`../notebooks/notebooks/brunel_exp_multisynapse_nest` * :doc:`../notebooks/notebooks/brunel_alpha_evolution_strategies` .. grid-item-card:: Cortical microcircuit (Potjans) :img-top: ../static/img/potjans_2014_raster_plot.png * :doc:`../notebooks/notebooks/Potjans_2014/index` .. grid-item-card:: GLIF (from Allen institute) :img-top: ../static/img/pynest/glif_cond.png * :doc:`../notebooks/notebooks/glif_cond_neuron` * :doc:`../notebooks/notebooks/glif_psc_neuron` * :doc:`../notebooks/notebooks/glif_psc_double_alpha_neuron` .. grid:: 1 1 2 3 .. grid-item-card:: Compartmental neurons :img-top: ../static/img/pynest/dendritic_synapse_conductances.png * :doc:`../notebooks/notebooks/compartmental_model/receptors_and_current` * :doc:`../notebooks/notebooks/compartmental_model/two_comps` .. grid-item-card:: Rate neurons :img-top: ../static/img/pynest/rate_neuron.png * :doc:`../notebooks/notebooks/lin_rate_ipn_network` * :doc:`../notebooks/notebooks/rate_neuron_dm` .. grid-item-card:: GIF (from Gerstner lab) :img-top: ../static/img/pynest/gif_pop.png * :doc:`../notebooks/notebooks/gif_cond_exp_multisynapse` * :doc:`../notebooks/notebooks/gif_population` * :doc:`../notebooks/notebooks/gif_pop_psc_exp` .. grid:: 1 1 2 3 .. grid-item-card:: Hodgkin-Huxley :img-top: ../static/img/pynest/hh_phase.png * :doc:`../notebooks/notebooks/hh_psc_alpha` * :doc:`../notebooks/notebooks/hh_phaseplane` .. grid-item-card:: Brody Hopfield :img-top: ../static/img/nest_logo-faded.png * :doc:`../notebooks/notebooks/BrodyHopfield` .. grid-item-card:: Brette and Gerstner :img-top: ../static/img/pynest/brette_gerstner2c.png * :doc:`../notebooks/notebooks/brette_gerstner_fig_2c` * :doc:`../notebooks/notebooks/brette_gerstner_fig_3d` .. grid:: 1 1 2 3 .. grid-item-card:: Precise spiking :img-top: ../static/img/pynest/precisespiking.png * :doc:`../notebooks/notebooks/precise_spiking` .. grid-item-card:: Campbell Siegert :img-top: ../static/img/nest_logo-faded.png * :doc:`../notebooks/notebooks/CampbellSiegert` .. grid-item-card:: SONATA network :img-top: ../static/img/300_pointneurons.png * :doc:`../notebooks/notebooks/sonata_example/sonata_network` .. grid:: 1 1 2 3 .. grid-item-card:: Gap junctions :img-top: ../static/img/pynest/gap_junctioninhib.png * :doc:`../notebooks/notebooks/gap_junctions_two_neurons` * :doc:`../notebooks/notebooks/gap_junctions_inhibitory_network` .. grid-item-card:: Structural plasticity :img-top: ../static/img/pynest/structuralplasticity.png * :doc:`../notebooks/notebooks/structural_plasticity` .. grid-item-card:: Synapse collection :img-top: ../static/img/pynest/synapsecollection.png * :doc:`../notebooks/notebooks/synapsecollection` .. grid:: 1 1 2 3 .. grid-item-card:: Urbanczik :img-top: ../static/img/pynest/urbanczik_syn.png * :doc:`../notebooks/notebooks/urbanczik_synapse_example` .. grid-item-card:: Clopath :img-top: ../static/img/pynest/clopath.png * :doc:`../notebooks/notebooks/clopath_synapse_spike_pairing` * :doc:`../notebooks/notebooks/clopath_synapse_small_network` .. grid-item-card:: Short-term plasticity :img-top: ../static/img/pynest/tsodyks_dep.png * :doc:`../notebooks/notebooks/iaf_tum_2000_short_term_depression` * :doc:`../notebooks/notebooks/iaf_tum_2000_short_term_facilitation` * :doc:`../notebooks/notebooks/evaluate_tsodyks2_synapse` .. grid:: 1 1 2 3 .. grid-item-card:: Recording and analyzing networks :img-top: ../static/img/pynest/correlospinmatrix.png * :doc:`../notebooks/notebooks/multimeter_file` * :doc:`../notebooks/notebooks/plot_weight_matrices` * :doc:`../notebooks/notebooks/if_curve` * :doc:`../notebooks/notebooks/pulsepacket` * :doc:`../notebooks/notebooks/correlospinmatrix_detector_two_neuron` * :doc:`../notebooks/notebooks/cross_check_mip_corrdet` .. grid-item-card:: Stimulating networks :img-top: ../static/img/pynest/sensitivitypertubation.png * :doc:`../notebooks/notebooks/sinusoidal_poisson_generator` * :doc:`../notebooks/notebooks/sinusoidal_gamma_generator` * :doc:`../notebooks/notebooks/repeated_stimulation` * :doc:`../notebooks/notebooks/sensitivity_to_perturbation` * :doc:`../notebooks/notebooks/intrinsic_currents_spiking` * :doc:`../notebooks/notebooks/intrinsic_currents_subthreshold` .. grid-item-card:: Handling output :img-top: ../static/img/pynest/store_restore.png * :doc:`../notebooks/notebooks/recording_demo` * :doc:`../notebooks/notebooks/store_restore_network` * :doc:`../notebooks/notebooks/music_cont_out_proxy_example/nest_script` .. grid:: 1 1 2 3 .. grid-item-card:: HPC benchmark :img-top: ../static/img/nest_logo-faded.png * :doc:`../notebooks/notebooks/hpc_benchmark` .. grid-item-card:: Connection set algebra :img-top: ../static/img/nest_logo-faded.png * :doc:`../notebooks/notebooks/csa_example` * :doc:`../notebooks/notebooks/csa_spatial_example` .. toctree:: :hidden: running_notebooks ../notebooks/notebooks/sudoku/index ../notebooks/notebooks/pong/index ../notebooks/notebooks/spatial/index ../notebooks/notebooks/music_cont_out_proxy_example/index ../notebooks/notebooks/compartmental_model/index ../notebooks/notebooks/Potjans_2014/index ../notebooks/notebooks/one_neuron ../notebooks/notebooks/one_neuron_with_noise ../notebooks/notebooks/twoneurons ../notebooks/notebooks/balancedneuron ../notebooks/notebooks/aeif_cond_beta_multisynapse ../notebooks/notebooks/gif_cond_exp_multisynapse ../notebooks/notebooks/brette_gerstner_fig_2c ../notebooks/notebooks/brette_gerstner_fig_3d ../notebooks/notebooks/hh_psc_alpha ../notebooks/notebooks/hh_phaseplane ../notebooks/notebooks/BrodyHopfield ../notebooks/notebooks/gif_population ../notebooks/notebooks/gif_pop_psc_exp ../notebooks/notebooks/mc_neuron ../notebooks/notebooks/glif_cond_neuron ../notebooks/notebooks/glif_psc_neuron ../notebooks/notebooks/glif_psc_double_alpha_neuron ../notebooks/notebooks/precise_spiking ../notebooks/notebooks/CampbellSiegert ../notebooks/notebooks/vinit_example ../notebooks/notebooks/recording_demo ../notebooks/notebooks/store_restore_network ../notebooks/notebooks/synapsecollection ../notebooks/notebooks/structural_plasticity ../notebooks/notebooks/gap_junctions_two_neurons ../notebooks/notebooks/gap_junctions_inhibitory_network ../notebooks/notebooks/evaluate_tsodyks2_synapse ../notebooks/notebooks/evaluate_quantal_stp_synapse ../notebooks/notebooks/clopath_synapse_spike_pairing ../notebooks/notebooks/clopath_synapse_small_network ../notebooks/notebooks/urbanczik_synapse_example ../notebooks/notebooks/iaf_tum_2000_short_term_depression ../notebooks/notebooks/iaf_tum_2000_short_term_facilitation ../notebooks/notebooks/compartmental_model/receptors_and_current ../notebooks/notebooks/compartmental_model/two_comps ../notebooks/notebooks/lin_rate_ipn_network ../notebooks/notebooks/rate_neuron_dm ../notebooks/notebooks/brunel_alpha_nest ../notebooks/notebooks/brunel_delta_nest ../notebooks/notebooks/brunel_siegert_nest ../notebooks/notebooks/brunel_exp_multisynapse_nest ../notebooks/notebooks/brunel_alpha_evolution_strategies ../notebooks/notebooks/sonata_example/index ../notebooks/notebooks/sonata_example/sonata_network ../notebooks/notebooks/spatial/conncomp ../notebooks/notebooks/spatial/conncon_sources ../notebooks/notebooks/spatial/conncon_targets ../notebooks/notebooks/spatial/connex ../notebooks/notebooks/spatial/connex_ew ../notebooks/notebooks/spatial/ctx_2n ../notebooks/notebooks/spatial/gaussex ../notebooks/notebooks/spatial/grid_iaf ../notebooks/notebooks/spatial/grid_iaf_irr ../notebooks/notebooks/spatial/grid_iaf_oc ../notebooks/notebooks/spatial/test_3d ../notebooks/notebooks/spatial/test_3d_exp ../notebooks/notebooks/spatial/test_3d_gauss ../notebooks/notebooks/testiaf ../notebooks/notebooks/repeated_stimulation ../notebooks/notebooks/multimeter_file ../notebooks/notebooks/sensitivity_to_perturbation ../notebooks/notebooks/plot_weight_matrices ../notebooks/notebooks/if_curve ../notebooks/notebooks/pulsepacket ../notebooks/notebooks/correlospinmatrix_detector_two_neuron ../notebooks/notebooks/sinusoidal_poisson_generator ../notebooks/notebooks/sinusoidal_gamma_generator ../notebooks/notebooks/cross_check_mip_corrdet ../notebooks/notebooks/intrinsic_currents_spiking ../notebooks/notebooks/intrinsic_currents_subthreshold ../notebooks/notebooks/csa_example ../notebooks/notebooks/csa_spatial_example ../notebooks/notebooks/hpc_benchmark ../notebooks/notebooks/astrocytes/index ../notebooks/notebooks/astrocytes/astrocyte_single ../notebooks/notebooks/astrocytes/astrocyte_interaction ../notebooks/notebooks/astrocytes/astrocyte_small_network ../notebooks/notebooks/astrocytes/astrocyte_brunel .. toctree:: :hidden: ../notebooks/notebooks/sudoku/sudoku_net ../notebooks/notebooks/sudoku/sudoku_solver ../notebooks/notebooks/sudoku/plot_progress .. toctree:: :hidden: ../notebooks/notebooks/pong/run_simulations ../notebooks/notebooks/pong/pong ../notebooks/notebooks/pong/generate_gif .. toctree:: :maxdepth: 1 :caption: Contents: :glob: * Indices and tables ================== * :ref:`genindex` * :ref:`modindex` * :ref:`search`